PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF029000080CFD_t1
Common NameTAA_ctg0005b.00040.1, TRAES_3BF029000080CFD_c1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 288aa    MW: 31478.7 Da    PI: 4.7195
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF029000080CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.29.1e-3080137359
                              -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                              D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+v+ +tY+ +Hnh+
  TRAES3BF029000080CFD_t1  80 DSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRADPTVLLVTYSYDHNHP 137
                              99************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.3E-3170139IPR003657WRKY domain
SuperFamilySSF1182908.76E-2676139IPR003657WRKY domain
SMARTSM007744.6E-3578138IPR003657WRKY domain
PfamPF031062.0E-2580137IPR003657WRKY domain
PROSITE profilePS5081131.43380139IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MSDCSTGTDS PRADSVDEQP PADAESPGGG QSKRDHPSPS SPLPPPKRSR RSVEKRVVSV  60
PISECGERAK TNGEGPPPPD SWAWRKYGQK PIKGSPYPRG YYRCSSSKGC PARKQVERSR  120
ADPTVLLVTY SYDHNHPWPA PKSGCQPNKS SPRLVDPKPE PGTPVECQPE HGPEAPEHGP  180
EAPEQDQEEE HEQKPVIGLA DPAAITTVTA AAEEEEESFD FGWFDQYPTW HRTALYVPAF  240
DVAPPPEDWE RELQGEDALF AGLGELPECA IVFGRRRELA LAATAPCS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-17801391674WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFN5644260.0FN564426.1 Triticum aestivum chromosome 3B-specific BAC library, contig ctg0005b.
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569817.11e-135PREDICTED: probable WRKY transcription factor 65
TrEMBLD8L9F70.0D8L9F7_WHEAT; Uncharacterized protein
STRINGBRADI2G49906.11e-135(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP70883651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.15e-38WRKY DNA-binding protein 65
Publications ? help Back to Top
  1. Breen J, et al.
    Wheat beta-expansin (EXPB11) genes: Identification of the expressed gene on chromosome 3BS carrying a pollen allergen domain.
    BMC Plant Biol., 2010. 10: p. 99
    [PMID:20507562]
  2. Choulet F, et al.
    Megabase level sequencing reveals contrasted organization and evolution patterns of the wheat gene and transposable element spaces.
    Plant Cell, 2010. 22(6): p. 1686-701
    [PMID:20581307]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]